PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114995.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 375aa    MW: 41519.7 Da    PI: 9.7276
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.24.5e-1819109273
        trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                     Wt +e+++Liea++ ++er  r++                    ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r +
  XP_009114995.1  19 WTLNETMVLIEAKKMDDERRMRRSiglpaaeqshdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 109
                     **************666666665445555666666667777669999****************************************9843 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7131194IPR017877Myb-like domain
PfamPF138379.6E-1318109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAGKSGGLAM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAAEQ SHDSRSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFAAESSSSA  120
AAETGTYWTM EKSERKERNL PSNMSPQTYQ ALFDVVESKT HPSSTAATNV TAAVAAAAAS  180
GNGSGGGLQI QKMIQQQQEQ GLGFVQKHQM IQPHVLLPLH PPPPPPLPPS QALQPRPLLL  240
SPPPPPSFHA QPILPTVDTS PAKRRRTIPT TTAGPSGAGR GNAETEEGET VVAAAFSRSA  300
SVIANAIRES EERQDRRHKE VMSLEERRLM IEESNVQINR EGMNGLVEAI NKLASSIFAF  360
ASSSHHNNQH QGGPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894440.0AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114995.10.0PREDICTED: uncharacterized protein LOC103840254 isoform X3
TrEMBLA0A0D3CF570.0A0A0D3CF57_BRAOL; Uncharacterized protein
STRINGBra023175.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.12e-67Trihelix family protein